Neurotranscriptome profiles of multiple zebrafish strains

Ryan Y. Wong, John Godwin

Research output: Contribution to journalArticle

4 Scopus citations

Abstract

Behavioral displays or physiological responses are often influenced by intrinsic and extrinsic mechanisms in the context of the organism's evolutionary history. Understanding differences in transcriptome profiles can give insight into adaptive or pathological responses. We utilize high throughput sequencing (RNA-sequencing) to characterize the neurotranscriptome profiles in both males and females across four strains of zebrafish (. Danio rerio). Strains varied by previously documented differences in stress and anxiety-like behavioral responses, and generations removed from wild-caught individuals. Here we describe detailed methodologies and quality controls in generating the raw RNA-sequencing reads that are publically available in NCBI's Gene Expression Omnibus database ( GSE61108).

Original languageEnglish (US)
Pages (from-to)206-209
Number of pages4
JournalGenomics Data
Volume5
DOIs
StatePublished - Sep 1 2015

Keywords

  • Brain
  • Gene expression
  • RNA-sequencing
  • Sex
  • Zebrafish

ASJC Scopus subject areas

  • Biotechnology
  • Biochemistry
  • Molecular Medicine
  • Genetics

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