Quantifying vitamin K-dependent holoprotein compaction caused by differential γ-carboxylation using high-pressure size exclusion chromatography

This study uses high-pressure size exclusion chromatography (HPSEC) to quantify divalent metal ion (X²⁺)-induced compaction found in vitamin K-dependent (VKD) proteins. Multiple X²⁺ binding sites formed by the presence of up to 12 γ-carboxyglutamic acid (Gla) residues are present in plasma-derived FIX (pd-FIX) and recombinant FIX (r-FIX). Analytical ultracentrifugation (AUC) was used to calibrate the Stokes radius (R) measured by HPSEC. A compaction of pd-FIX caused by the filling of Ca²⁺ and Mg²⁺ binding sites resulted in a 5 to 6% decrease in radius of hydration as observed by HPSEC. The filling of Ca²⁺ sites resulted in greater compaction than for Mg²⁺ alone where this effect was additive or greater when both ions were present at physiological levels. Less X²⁺-induced compaction was observed in r-FIX with lower Gla content populations, which enabled the separation of biologically active r-FIX species from inactive ones by HPSEC. HPSEC was sensitive to R changes of approximately 0.01 nm that enabled the detection of FIX compaction that was likely cooperative in nature between lower avidity X²⁺ sites of the Gla domain and higher avidity X²⁺ sites of the epidermal growth factor 1 (EGF1)-like domain.